Gallery

Cattle Y-chromosome read-depth profiles comparing controls and Swyer syndrome cases. Matched whole-chromosome and terminal-region views highlight SRY coverage loss in seven cases. Based on Berry et al. 2023.

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Read-depth comparison across canine COMMD1. Affected Dalmatians retain coverage across the interval where an affected Bedlington Terrier shows exon-level coverage loss.

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Dominant Red cattle color maps to the conserved COPA Arg160 site, shown in the human COPA WD-repeat domain structure (PDB 6PBG) and an orthologous protein alignment. Based on Dorshorst et al. 2015.

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Human mitochondrial common deletion analysis comparing control and common-deletion RNA-seq samples. Rainfall plots show remap-supported mtDNA deletion calls, and the medium-size distribution highlights support near the canonical 4977 bp common deletion. Based on Vandiver et al. 2025.

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Four comparative genome visualization layouts generated with the Genome Artistry tool in Proksee, showing the same data as linear, wrapped, circular, and spiral layouts.

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Segment-colored neighbor-chain comparative genome ribbon plot generated with the Genome Loom tool in Proksee.

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Linear bacterial genome comparison poster generated with the Genome Artistry tool in Proksee.

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Spiral bacterial genome comparison poster generated with the Genome Artistry tool in Proksee.

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Bacterial genome comparison using CGView Comparison Tool.

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Structural variant distribution in cattle visualized using KaryoploteR.

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Identifying changes in X chromosome gene expression with OmicCircos.

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Word cloud of Stothard Research Group publication keywords.

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Using genome coverage data to check sample sex.

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Comparing Manta structural variant genotypes to GATK SNP genotypes for estimating sample relatedness.

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Analyzing a bacterial genome using Proksee.

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Animation showing how EBV estimates improve as progeny information accumulates. Red dots are TBVs and blue dots are EBVs.

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Visualizing a duplication in the cattle genome using SVDB-DC.

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Map of Riverbend in Edmonton generated using map-artistry, with copper-toned buildings and dark bold roads from OpenStreetMap data.

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Map of Edmonton generated using map-artistry.

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Map of Edmonton generated using map-artistry.

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Map of southern BC generated using map-artistry.

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Map of Vancouver Island BC generated using map-artistry.

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